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A list of research publications that utilized UArizona's HPC system resources.

titleSteward Observatory, Department of Astronomy

Ball, D., Özel, F., Psaltis, D., & Chan, C. K. (2016). Particle Acceleration and the Origin of X-Ray Flares in GRMHD Simulations of SGR A. The Astrophysical Journal, 826(1), 77.
Behroozi, P., Wechsler, R. H., Hearin, A. P., & Conroy, C. (2019). UniverseMachine: The correlation between galaxy growth and dark matter halo assembly from z= 0− 10. Monthly Notices of the Royal Astronomical Society, 488(3), 3143-3194.

Besla, G., Peter, A. H. G., & Garavito-Camargo, N. (2019). The highest-speed local dark matter particles come from the Large Magellanic Cloud. Journal of Cosmology and Astroparticle Physics, 2019(11), 013.

Boruah, S. S., Eifler, T., & Miranda, V. (2022). Accelerating cosmological inference with Gaussian processes and neural networks--an application to LSST Y1 weak lensing and galaxy clustering. arXiv preprint arXiv:2203.06124.

Bozzola, G., Espino, P. L., Lewin, C. D., & Paschalidis, V. (2019). Maximum mass and universal relations of rotating relativistic hybrid hadron-quark stars. The European Physical Journal A, 55(9), 1-18.
Bozzola, G., & Paschalidis, V. (2019). Initial data for general relativistic simulations of multiple electrically charged black holes with linear and angular momenta. Physical Review D, 99(10), 104044.
Chan, C. K., Medeiros, L., Özel, F., & Psaltis, D. (2018). GRay2: a general purpose geodesic integrator for kerr spacetimes. The Astrophysical Journal, 867(1), 59.
Eifler, T., Simet, M., Krause, E., Hirata, C., Huang, H. J., Fang, X., ... & Wu, H. Y. (2020). Cosmology with the Wide-Field Infrared Survey Telescope–Synergies with the Rubin Observatory Legacy Survey of Space and Time. arXiv e-prints, art. arXiv preprint arXiv:2004.04702.

Eifler, T., Miyatake, H., Krause, E., Heinrich, C., Miranda, V., Hirata, C., ... & Wu, H. Y. (2021). Cosmology with the Roman Space Telescope–multiprobe strategies. Monthly Notices of the Royal Astronomical Society, 507(2), 1746-1761.

Eifler, T., Simet, M., Krause, E., Hirata, C., Huang, H. J., Fang, X., ... & Wu, H. Y. (2021). Cosmology with the Roman Space Telescope: synergies with the Rubin Observatory Legacy Survey of Space and Time. Monthly Notices of the Royal Astronomical Society, 507(1), 1514-1527.

Fang, X., Eifler, T., & Krause, E. (2020). 2D-FFTLog: efficient computation of real-space covariance matrices for galaxy clustering and weak lensing. Monthly Notices of the Royal Astronomical Society, 497(3), 2699-2714.

Fang, X., Eifler, T., Schaan, E., Huang, H. J., Krause, E., & Ferraro, S. (2022). Cosmology from clustering, cosmic shear, CMB lensing, and cross correlations: combining Rubin observatory and Simons Observatory. Monthly Notices of the Royal Astronomical Society, 509(4), 5721-5736.

Garavito-Camargo, N., Besla, G., Laporte, C. F., Johnston, K. V., Gómez, F. A., & Watkins, L. L. (2019). Hunting for the dark matter wake induced by the large magellanic cloud. The Astrophysical Journal, 884(1), 51.

Jeon, M., Besla, G., & Bromm, V. (2017). Connecting the first galaxies with ultrafaint dwarfs in the Local Group: chemical signatures of Population III stars. The Astrophysical Journal, 848(2), 85.

Kong, S., Whitworth, D. J., Smith, R. J., & Hamden, E. T. (2022). Filament formation via collision-induced magnetic reconnection–formation of a star cluster. Monthly Notices of the Royal Astronomical Society, 517(4), 4679-4695.

Long, J. D., Males, J. R., Haffert, S. Y., Close, L. M., Morzinski, K. M., Van Gorkom, K., ... & Otten, G. P. (2022). XPipeline: Starlight subtraction at scale for MagAO-X. arXiv preprint arXiv:2208.07354.

Raithel, C. A., Özel, F., & Psaltis, D. (2017). From Neutron Star Observables to the Equation of State. II. Bayesian Inference of Equation of State Pressures. The Astrophysical Journal, 844(2), 156.
Raithel, C. A., Özel, F., & Psaltis, D. (2016). Model-independent inference of neutron star radii from moment of inertia measurements. Physical Review C, 93(3), 032801.
Schneider, E. E., & Robertson, B. E. (2015). CHOLLA: a new massively parallel hydrodynamics code for astrophysical simulation. The Astrophysical Journal Supplement Series, 217(2), 24.
Schneider, E. E., & Robertson, B. E. (2017). Hydrodynamical coupling of mass and momentum in multiphase galactic winds. The Astrophysical Journal, 834(2), 144.
Smullen, R. A., Kratter, K. M., & Shannon, A. (2016). Planet scattering around binaries: ejections, not collisions. Monthly Notices of the Royal Astronomical Society, 461(2), 1288-1301.

Wenzl, L., Doux, C., Heinrich, C., Bean, R., Jain, B., Doré, O., ... & Fang, X. (2022). Cosmology with the Roman Space Telescope–Synergies with CMB lensing. Monthly Notices of the Royal Astronomical Society, 512(4), 5311-5328.

Xu, J., Eifler, T., Huff, E., Huang, H. J., Everett, S., & Krause, E. (2022). Kinematic Lensing with the Roman Space Telescope. arXiv preprint arXiv:2201.00739.

Woodrum, C., Williams, C. C., Rieke, M., Leja, J., Johnson, B. D., Bezanson, R., ... & Tacchella, S. (2022). Molecular Gas Reservoirs in Massive Quiescent Galaxies at $\mathrm {z\sim0. 7} $ Linked to Late Time Star Formation. arXiv preprint arXiv:2210.03832.

Yung, L. Y., Somerville, R. S., Finkelstein, S. L., Behroozi, P., Davé, R., Ferguson, H. C., ... & Koekemoer, A. M. (2022). Semi-analytic forecasts for Roman--the beginning of a new era of deep-wide galaxy surveys. arXiv preprint arXiv:2210.04902.

titleSchwartz Research Group

Dzierlenga, M. W., Antoniou, D., & Schwartz, S. D. (2015). Another look at the mechanisms of hydride transfer enzymes with quantum and classical transition path sampling. The journal of physical chemistry letters, 6(7), 1177-1181.
Dzierlenga, M. W., Varga, M. J., & Schwartz, S. D. (2016). Path Sampling Methods for Enzymatic Quantum Particle Transfer Reactions. Methods in enzymology, 578, 21-43.
Harijan, R. K., Zoi, I., Antoniou, D., Schwartz, S. D., & Schramm, V. L. (2017). Catalytic-site design for inverse heavy-enzyme isotope effects in human purine nucleoside phosphorylase. Proceedings of the National Academy of Sciences, 114(25), 6456-6461.
Luft, C. M., Munusamy, E., Pemberton, J. E., & Schwartz, S. D. (2018). Molecular dynamics simulation of the oil sequestration properties of a nonionic rhamnolipid. The Journal of Physical Chemistry B, 122(14), 3944-3952.
McConnell, M., Tal Grinspan, L., Williams, M. R., Lynn, M. L., Schwartz, B. A., Fass, O. Z., ... & Tardiff, J. C. (2017). Clinically divergent mutation effects on the structure and function of the human cardiac tropomyosin overlap. Biochemistry, 56(26), 3403-3413.
Munusamy, E., Luft, C. M., Pemberton, J. E., & Schwartz, S. D. (2017). Structural properties of nonionic monorhamnolipid aggregates in water studied by classical molecular dynamics simulations. The Journal of Physical Chemistry B, 121(23), 5781-5793.
Pan, X., & Schwartz, S. D. (2016). Conformational heterogeneity in the michaelis complex of lactate dehydrogenase: An analysis of vibrational spectroscopy using markov and hidden markov models. The Journal of Physical Chemistry B, 120(27), 6612-6620.
Pan, X., & Schwartz, S. D. (2015). Free energy surface of the Michaelis complex of lactate dehydrogenase: a network analysis of microsecond simulations. The Journal of Physical Chemistry B, 119(17), 5430-5436.
Williams, M. R., Lehman, S. J., Tardiff, J. C., & Schwartz, S. D. (2016). Atomic resolution probe for allostery in the regulatory thin filament. Proceedings of the National Academy of Sciences, 113(12), 3257-3262.
Zoi, I., Suarez, J., Antoniou, D., Cameron, S. A., Schramm, V. L., & Schwartz, S. D. (2016). Modulating enzyme catalysis through mutations designed to alter rapid protein dynamics. Journal of the American Chemical Society, 138(10), 3403-3409.


Alsayoud, A. Q., Manga, V. R., Muralidharan, K., Vita, J., Bringuier, S., Runge, K., & Deymier, P. (2018). Atomistic insights into the effect of polymerization on the thermophysical properties of 2-D C-60 molecular solids. Carbon, 133, 267-274.
Bamberger, N. D., Dyer, D., Parida, K. N., El-Assaad, T. H., Pursell, D., McGrath, D. V., ... & Monti, O. L. (2022). Beyond Simple Structure–Function Relationships: The Interplay of Geometry, Electronic Structure, and Molecule/Electrode Coupling in Single-Molecule Junctions. The Journal of Physical Chemistry C, 126(15), 6653-6661.

Benowitz, K. M., Allan, C. W., Jaworski, C. C., Sanderson, M. J., Diaz, F., Chen, X., & Matzkin, L. M. (2022). Chromosome-length genome assemblies of cactophilic Drosophila illuminate links between structural and sequence evolution. bioRxiv.

Chen, Y., Martinez, A., Cleavenger, S., Rudolph, J., & Barberán, A. (2021). Changes in soil microbial communities across an urbanization gradient: A local-scale temporal study in the arid southwestern usa. Microorganisms, 9(7), 1470.
Chen, Y., Neilson, J. W., Kushwaha, P., Maier, R. M., & Barberán, A. (2021). Life-history strategies of soil microbial communities in an arid ecosystem. The ISME journal, 15(3), 649-657.
Danford, F., Welch, E., Cárdenas-Ródriguez, J., & Strout, M. M. (2016, September). Analyzing parallel programming models for magnetic resonance imaging. In International Workshop on Languages and Compilers for Parallel Computing (pp. 188-202). Springer, Cham.
Das Goswami, B. R., Jabbari, V., Shahbazian-Yassar, R., Mashayek, F., & Yurkiv, V. (2023). Unraveling Ion Diffusion Pathways and Energetics in Polycrystalline SEI of Lithium-Based Batteries: Combined Cryo-HRTEM and DFT Study. The Journal of Physical Chemistry C.
Dunham, A. M., Kiser, E., Kargel, J. S., Haritashya, U. K., Watson, C. S., Shugar, D. H., ... & DeCelles, P. G. (2022). Topographic control on ground motions and landslides from the 2015 Gorkha earthquake. Geophysical Research Letters, e2022GL098582.
Esmaili, E., Akoglu, A., Hariri, S., & Moukabary, T. (2019). Implementation of scalable bidomain-based 3d cardiac simulations on a graphics processing unit cluster. The Journal of Supercomputing, 75(8), 5475-5506.
Gillan, J. K., Ponce‐Campos, G. E., Swetnam, T. L., Gorlier, A., Heilman, P., & McClaran, M. P. (2021). Innovations to expand drone data collection and analysis for rangeland monitoring. Ecosphere, 12(7), e03649.
Gladstein, A. L., Quinto-Cortés, C. D., Pistorius, J. L., Christy, D., Gantner, L., & Joyce, B. L. (2018). SimPrily: A Python framework to simplify high-throughput genomic simulations. SoftwareX, 7, 335-340.
Gonzalez, E., Zarei, A., Hendler, N., Simmons, T., Zarei, A., Demieville, J., ... & Pauli, D. (2023). PhytoOracle: Scalable, modular phenomics data processing pipelines. Frontiers in Plant Science, 14.
Gorelik, R., Asaduzzaman, A., Manga, V. R., Thakur, A., & Muralidharan, K. (2022). A First-Principles Investigation of Lithium and Sodium Ion Diffusion in C60 Molecular Solids. The Journal of Physical Chemistry C, 126(9), 4259-4266.
Grant, A. D., Vail, P., Padi, M., Witkiewicz, A. K., & Knudsen, E. S. (2019). Interrogating mutant allele expression via customized reference genomes to define influential cancer mutations. Scientific reports, 9(1), 1-15.
He, W., Guha, S., Shapiro, J. H., & Bash, B. A. (2021). Performance analysis of free-space quantum key distribution using multiple spatial modes. Optics Express, 29(13), 19305-19318.
Hendler, N. P., Mulders, G. D., Pascucci, I., Greenwood, A., Kamp, I., Henning, T., ... & Evans II, N. J. (2017). Hints for Small Disks around Very Low Mass Stars and Brown Dwarfs∗. The Astrophysical Journal, 841(2), 116.
Hosseinverdi, S., & Fasel, H. F. (2022). Towards understanding of natural boundary-layer transition for low-speed flows via random excitation. In IUTAM Laminar-Turbulent Transition (pp. 391-405). Springer, Cham.
Hviding, R. E., Hainline, K. N., Rieke, M., Juneau, S., Lyu, J., & Pucha, R. (2022). A New Infrared Criterion for Selecting Active Galactic Nuclei to Lower Luminosities. The Astronomical Journal, 163(5), 224.
Ivie, J. A., Bamberger, N. D., Parida, K. N., Shepard, S., Dyer, D., Saraiva-Souza, A., ... & Monti, O. L. (2021). Correlated energy-level alignment effects determine substituent-tuned single-molecule conductance. ACS Applied Materials & Interfaces, 13(3), 4267-4277.
Jaworski, C. C., Allan, C. W., & Matzkin, L. M. (2020). Chromosome‐level hybrid de novo genome assemblies as an attainable option for nonmodel insects. Molecular ecology resources, 20(5), 1277-1293.
Kinney, A. C., Current, S., & Lega, J. (2021). Aedes-AI: Neural network models of mosquito abundance. PLoS computational biology, 17(11), e1009467.
Klein, K. G., Verniero, J. L., Alterman, B., Bale, S., Case, A., Kasper, J. C., ... & Whittlesey, P. (2021). Inferred Linear Stability of Parker Solar Probe Observations Using One-and Two-component Proton Distributions. The Astrophysical Journal, 909(1), 7.
Klein, K. G., Martinović, M., Stansby, D., & Horbury, T. S. (2019). Linear stability in the inner heliosphere: Helios re-evaluated. The Astrophysical Journal, 887(2), 234.
Kling, F., Li, H., Pyarelal, A., Song, H., & Su, S. (2019). Exotic Higgs decays in Type-II 2HDMs at the LHC and future 100 TeV hadron colliders. Journal of High Energy Physics, 2019(6), 1-33.
Lemoine, D. (2021). The climate risk premium: how uncertainty affects the social cost of carbon. Journal of the Association of Environmental and Resource Economists, 8(1), 27-57.
Li, H., & Bredas, J. L. (2021). Impact of structural defects on the elastic properties of two-dimensional covalent organic frameworks (2D COFs) under tensile stress. Chemistry of Materials, 33(12), 4529-4540.
Li, H., Evans, A. M., Dichtel, W. R., & Bredas, J. L. (2021). Quantitative Description of the Lateral Growth of Two-Dimensional Covalent Organic Frameworks Reveals Self-Templation Effects. ACS Materials Letters, 3(4), 398-405.
Li, Q., Schissler, A. G., Gardeux, V., Berghout, J., Achour, I., Kenost, C., ... & Lussier, Y. A. (2017). kMEn: Analyzing noisy and bidirectional transcriptional pathway responses in single subjects. Journal of biomedical informatics, 66, 32-41.
Li, Q., Schissler, A. G., Gardeux, V., Achour, I., Kenost, C., Berghout, J., ... & Lussier, Y. A. (2017). N-of-1-pathways MixEnrich: advancing precision medicine via single-subject analysis in discovering dynamic changes of transcriptomes. BMC Medical Genomics, 10(1), 5-16.
Lin, A. S., Monson, A., Mahadevan, S., Ninan, J. P., Halverson, S., Nitroy, C., ... & Stefansson, G. (2022). Observing the Sun as a star: Design and early results from the NEID solar feed. The Astronomical Journal, 163(4), 184.
Lorenzo, A. T., Morzfeld, M., Holmgren, W. F., & Cronin, A. D. (2017). Optimal interpolation of satellite and ground data for irradiance nowcasting at city scales. Solar Energy, 144, 466-474.
Lucas, P., Coleman, G. J., Venkateswara Rao, M., Edwards, A. N., Devaadithya, C., Wei, S., ... & Deymier, P. A. (2017). Structure of ZnCl2 melt. Part II: Fragile-to-strong transition in a tetrahedral liquid. The Journal of Physical Chemistry B, 121(49), 11210-11218.
Luk, S. M., Vergnet, H., Lafont, O., Lewandowski, P., Kwong, N. H., Galopin, E., ... & Baudin, E. (2021). All-optical beam steering using the polariton lighthouse effect. ACS Photonics, 8(2), 449-454.
Manga, V. R., Muralidharan, K., & Zega, T. J. (2022). The interplay between twinning and cation inversion in MgAl2O4-spinel: Implications for a nebular thermochronometer. American Mineralogist, 107(8), 1470-1476.
Pyarelal, A., & Su, S. (2020). Higgs assisted razor search for Higgsinos at a 100 TeV pp collider. SCIENCE CHINA Physics, Mechanics & Astronomy, 63(10), 1-9.
Román‐Palacios, C., Moraga‐López, D., & Wiens, J. J. (2022). The origins of global biodiversity on land, sea and freshwater. Ecology letters.
Sarid, G., Volk, K., Steckloff, J. K., Harris, W., Womack, M., & Woodney, L. M. (2019). 29P/Schwassmann–Wachmann 1, a centaur in the gateway to the Jupiter-family comets. The Astrophysical Journal Letters, 883(1), L25.
Schissler, A. G., Piegorsch, W. W., & Lussier, Y. A. (2018). Testing for differentially expressed genetic pathways with single-subject N-of-1 data in the presence of inter-gene correlation. Statistical methods in medical research, 27(12), 3797-3813.
Schissler, A. G., Li, Q., Chen, J. L., Kenost, C., Achour, I., Billheimer, D. D., ... & Lussier, Y. A. (2016). Analysis of aggregated cell–cell statistical distances within pathways unveils therapeutic-resistance mechanisms in circulating tumor cells. Bioinformatics, 32(12), i80-i89.
Schlawin, E., Rieke, M., Leisenring, J., Walker, L. M., Fraine, J., Kelly, D., ... & Stansberry, J. (2016). Two NIRCam channels are better than one: how JWST can do more science with NIRCam’s short-wavelength dispersed Hartmann sensor. Publications of the Astronomical Society of the Pacific, 129(971), 015001.

Song, J. P., Mazumdar, S., & Clay, R. T. (2021). Absence of Luther-Emery superconducting phase in the three-band model for cuprate ladders. Physical Review B, 104(10), 104504.

Song, J. P., Clay, R. T., & Mazumdar, S. (2022). Valence Transition Theory of the Pressure-Induced Dimensionality Crossover in Superconducting Sr $ _ {14-x} $ Ca $ _x $ Cu $ _ {24} $ O $ _ {41} $. arXiv preprint arXiv:2207.00628.

Spotnitz, M., Kwong, N. H., & Binder, R. Terahertz spectroscopy of semiconductor microcavity lasers. In 2021 INTERNATIONAL SYMPOSIUM (p. 38).

Tamadoni Saray, M., Yurkiv, V., & Shahbazian-Yassar, R. (2023). Role of Kinetics and Thermodynamics in Controlling the Crystal Structure of Nickel Nanoparticles Formed on Reduced Graphene Oxide: Implications for Energy Storage and Conversion Applications. ACS Applied Nano Materials.

Tanjaroon, C., Zhou, Z., Mills, D., Keck, K., & Kukolich, S. G. (2020). Microwave Spectra and Theoretical Calculations for Two Structural Isomers of Methylmanganese Pentacarbonyl. Inorganic chemistry, 59(9), 6432-6438.

Tanjaroon, C., Mills, D. D., Hoyos, C. A. J., & Kukolich, S. G. (2021). Calculations and analysis of 55Mn nuclear quadrupole coupling for asymmetric top acyl methyl manganese pentacarbonyl. Chemical Physics Letters, 762, 138151.
Thakur, A. K., Muralidharan, K., Zega, T. J., & Ziurys, L. M. (2022). A nanometric window on fullerene formation in the interstellar medium: Insights from molecular dynamics studies. The Journal of Chemical Physics, 156(15), 154704.
Vasquez, M. M., Hu, C., Roe, D. J., Chen, Z., Halonen, M., & Guerra, S. (2016). Least absolute shrinkage and selection operator type methods for the identification of serum biomarkers of overweight and obesity: simulation and application. BMC medical research methodology, 16(1), 1-19.
Volk, K., & Malhotra, R. (2019). Not a simple relationship between Neptune’s migration speed and Kuiper belt inclination excitation. The Astronomical Journal, 158(2), 64.
Xiong, Z., Potter, C. J., & McLeod, E. (2021). High-speed lens-free holographic sensing of protein molecules using quantitative agglutination assays. ACS sensors, 6(3), 1208-1217.
Yang, B., Balazs, K. R., Butterfield, B. J., Laushman, K. M., Munson, S. M., Gornish, E. S., & Barberán, A. (2022). Does restoration of plant diversity trigger concomitant soil microbiome changes in dryland ecosystems?. Journal of Applied Ecology, 59(2), 560-573.
Yazdi, E. T., Limaye, A., Akoglu, A., Adegbija, T., & Buntzman, A. (2019, December). Bit-wise and Multi-GPU Implementations of the DNA Recombination Algorithm. In 2019 IEEE 26th International Conference on High Performance Computing, Data, and Analytics (HiPC) (pp. 131-140). IEEE.
Zanetta, P. M. (2022). The Unrestrained Use of Python Libraries for Bridging the Gap Between Planetary and Material Sciences. Microscopy and Microanalysis, 28(S1), 2686-2688.
Zhang, Y., Weeks, R. R., Lecaplain, C., Harilal, S. S., Yeak, J., Phillips, M. C., & Jones, R. J. (2021). Burst-mode dual-comb spectroscopy. Optics letters, 46(4), 860-863.

Zhou, Z., Daly, A. M., & Kukolich, S. G. (2021). Microwave measurements of rotational transitions and nitrogen quadrupole coupling for 2-aminopyridine. Journal of Molecular Spectroscopy, 378, 111457.

Z. Gong, N. Rodriguez, C. N. Gagatsos, S. Guha and B. A. Bash, "Quantum-Enhanced Transmittance Sensing," in IEEE Journal of Selected Topics in Signal Processing, doi: 10.1109/JSTSP.2022.3222680.

James Webb Space Telescope